Well, I made a new ghost of my system, then with only one drive plugged in, I ran the RC's fixboot. No luck. Then I ran the fix mbr. Again no luck.
Basically If I open up the disk management, it shows the drive, and the first partition is shown as active. It should also show as system.
Now right clicking on that partition and choosing change drive letter+ paths brings up a box that should show it as "C". The second partition should also show up as "D". There is nothing listed when I go in here. The OS does recognize these as C+D drive letters. Granted I can change the drive letters around, but it still will not show the drive letter in that app.
Right now the PC runs fine, however I'm afraid down the road I will have further problems. That is why I'd like this fixed. Any ideas would be great. I really want to avoid another OS reinstall.
-Ry