Not sure if you found a solution or not, but I'd reboot the server, and see if the file is still in use. Also, you may wish to compare an MD5 hash of the w2ksp3.exe file... Mine reads:
fdd5aac32f63e67f0cd28c6a1d50a1e4
Exact file size:
130,978,672 Bytes
If yours differs, I'd redownload it, may have some corruption.
Hope that helps.
Adam